Payment &
Contract Support —
Deliver the Order,
Collect Every Rupee
Winning a government contract and fulfilling the order is only part of the cycle. The payment — and the legal framework that protects your right to it — is what converts your effort into revenue. Government payment processes involve multiple portal steps, invoice format requirements, PFMS registration, and contract clauses that directly affect when and whether you get paid. TaxClue manages every post-delivery step so payments arrive on time and contracts protect your interests.
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Delivering the Order Is Step One. Getting Paid Requires Getting Four More Steps Right.
Government buyers operate within a structured payment process — invoice upload, internal approval, PFMS processing, and bank transfer — that has specific requirements at each stage. An error at any step stops the payment without an automatic notification to the supplier. Most government payment delays are not deliberate — they are process failures that a well-prepared supplier can prevent or quickly resolve.
Invoice Format Errors
Wrong GSTIN, incorrect HSN, missing PO reference, or wrong GST rate on the invoice — the buyer's accounts system rejects it automatically, often without notifying the supplier
PreventablePFMS Not Registered
Central Government payments are processed exclusively through PFMS (Public Financial Management System). A supplier not registered on PFMS simply cannot receive a direct Central Government payment — the payment has nowhere to go
Mandatory for Central Govt.No Visibility on Payment Stage
Once an invoice is submitted, most suppliers have no way to track where in the approval and payment chain it currently sits — leading to repeated phone calls, missed escalation windows, and months of unnecessary delay
Avoidable DelaysWeak Contract Terms
Signing a government or PSU contract without reviewing payment timeline clauses, penalty provisions, and dispute resolution mechanisms can leave a supplier with no contractual basis to demand timely payment
Contractual RiskTDS & Deduction Surprises
Government buyers apply TDS, security deposit deductions, and liquidated damages at payment stage. Unprepared suppliers receive less than invoiced — and may have incorrect TDS in Form 26AS if the buyer files wrongly
Reconciliation RequiredPayment SLA Unenforced
GeM has a 10-day payment SLA. Central Government orders are governed by the MSME Delayed Payment Act for MSME suppliers. But these rights are only enforceable if properly invoked — most suppliers simply wait and accept delays
Enforceable RightsInvoice to Payment — Every Stage of the Post-Delivery Cycle Managed
TaxClue's payment and contract services address every friction point between confirmed order fulfilment and cleared bank payment.
Invoice Upload Assistance — The Right Invoice, Uploaded Correctly, That the System Accepts First Time
A government tax invoice is significantly more complex than a commercial invoice. It must contain the buyer's GSTIN (which varies by ministry, state, and budget head), the correct HSN or SAC code for each line item, the exact GST rate applicable, the GeM order ID or PO reference number, the place of supply, and a sequential invoice number. Missing or incorrect any one of these fields causes the invoice to be rejected — either by the buyer's internal accounts system or by the GSTN's invoice matching mechanism.
On GeM, invoice upload is a portal workflow — the invoice is not just emailed but uploaded through a specific module that links it to the order, the delivery confirmation, and the buyer's approval queue. TaxClue prepares the invoice in the correct format, performs a pre-upload validation check against the order details, and manages the upload workflow to eliminate first-time rejection.
- GST Invoice ComplianceAll mandatory GST Act fields verified before upload — GSTIN of supplier and buyer, HSN/SAC, taxable value, GST rate per line item, and total tax amount. The invoice must match the buyer's GST portal records exactly
- Buyer GSTIN AccuracyGovernment buyers — ministries, departments, PSUs — have different GSTINs for different offices. Invoicing the wrong GSTIN of the same organisation (e.g. head office GSTIN vs division GSTIN) causes rejection by the accounts team and GST mismatch
- GeM Invoice Upload WorkflowGeM's invoice upload module requires the invoice to reference the exact order ID, delivery confirmation number, and item-wise pricing. TaxClue manages this portal workflow and confirms the upload acknowledgment
- HSN Code VerificationThe HSN code on the invoice must match the HSN code used in the GeM catalogue listing or the tender BOQ. A mismatch between the listing HSN and the invoice HSN triggers a query from the buyer's GST reconciliation team
- Multi-Item and Split Invoice HandlingFor orders covering multiple product categories with different GST rates, or partial delivery invoices against a single PO, TaxClue structures the invoice correctly — splitting line items, applying correct rates per item, and sequencing partial invoices against the master PO
- E-Invoice Generation (Where Mandatory)Suppliers with annual turnover above the e-invoicing threshold must generate IRN-stamped e-invoices through the GSTN e-invoice portal before uploading to the buyer. TaxClue handles e-invoice generation and QR code embedding
The cascading invoice error: A wrong GST rate on an invoice is not just a billing error — it creates a GST mismatch in the buyer's GSTR-2A/2B (their input tax credit records). The buyer's accounts team rejects the invoice to avoid an ITC discrepancy. Correcting it requires a credit note, a revised invoice, and re-uploading — adding 2–4 weeks to payment. Getting it right the first time saves weeks.
Payment Tracking Support — Know Where Every Rupee Is and When It Will Arrive
Once an invoice is submitted and delivery is confirmed, a government payment passes through multiple internal approval stages before reaching the supplier's bank account. On GeM, the sequence is: delivery confirmation → buyer acceptance → DDO (Drawing and Disbursing Officer) approval → PAO (Pay and Accounts Office) processing → PFMS credit → bank transfer. Each stage can stall. Most suppliers have no visibility beyond the point of submission.
TaxClue's payment tracking service establishes active monitoring across the payment chain — using GeM's payment tracker, PFMS payment status lookups, and direct follow-up with the buyer's accounts officer — so you know exactly which stage your payment is at and what is needed to advance it. When payments breach their SLA, TaxClue prepares and escalates formal payment delay notices.
- GeM Payment Tracker MonitoringGeM provides a payment dashboard that shows invoice status, buyer acceptance date, PAO processing status, and expected payment date. TaxClue monitors this dashboard and flags anomalies — invoices stuck in PAO queue, buyer acceptance overdue, or payment held on a query
- PFMS Payment Status LookupCentral Government payments are processed through PFMS. Once an invoice is at the PAO stage, its PFMS status can be tracked by the payment reference number. TaxClue traces stuck PFMS payments and identifies whether the hold is technical (wrong bank details), financial (budget exhausted for the quarter), or administrative (approver absent)
- 10-Day SLA Enforcement on GeMGeM's buyer payment SLA is 10 days from acceptance. When this is breached, TaxClue prepares a formal escalation to the buyer's procurement officer, GeM helpdesk, and — for persistent delays — to the buyer organisation's nodal officer for GeM compliance
- MSME Delayed Payment Act RightsMSME-registered suppliers have specific legal protections under the MSME Development Act — buyers must pay within 45 days or pay compound interest. TaxClue prepares the payment delay notice and, if required, the MSME Samadhaan filing for interest recovery
- TDS ReconciliationGovernment buyers deduct TDS under Section 194C or 194J on most payments. TaxClue reconciles the TDS deducted at source against Form 26AS and ensures the deducted amount has been correctly credited to your PAN — mismatched TDS creates ITR filing complications
- Security Deposit & Retention Money TrackingMany PSU and government contracts retain a percentage (typically 5–10%) as security deposit released only on contract completion or warranty expiry. TaxClue tracks these retention amounts and prepares the refund application at the correct time
Quarter-end budget freeze: Central Government DDOs frequently exhaust their quarterly spending budget and cannot approve new payments until the next quarter opens (April, July, October, January). Payments submitted in mid-March may not move until April. TaxClue tracks budget cycle timing and advises clients to invoice early in a quarter wherever possible to avoid quarter-end freeze.
PFMS Registration Support — Without This, Central Government Payments Cannot Reach You
The Public Financial Management System (PFMS) is the Government of India's integrated platform for all Central Government expenditure. Every payment from a Central Government ministry, department, or Central PSU is processed through PFMS. A supplier whose bank account and GSTIN are not registered and verified on PFMS cannot receive a direct NEFT/RTGS payment from the Central Government — the payment will be processed but fail to credit, creating a suspension that must be manually resolved.
PFMS registration is not the same as GeM registration or MSME registration. It is a separate process — creating a vendor record in PFMS, validating the PAN against the Income Tax database, validating the bank account through a penny-drop verification, and linking the GSTIN — that must be completed before the first invoice is raised against a Central Government order. TaxClue completes the full PFMS registration and validation process.
- Agency-Specific PFMS EntryPFMS registration is initiated through the specific government agency (ministry or department) that issued the purchase order — it is not a central self-registration. TaxClue coordinates with the agency's PFMS administrator to initiate vendor creation
- PAN–TAN–GSTIN Linkage VerificationPFMS cross-checks PAN, GSTIN, and the company's legal name against CBDT and GSTN databases. Inconsistencies between the name as registered with Income Tax and as declared in PFMS cause registration failure — TaxClue identifies and resolves these before submission
- Bank Account Penny-Drop VerificationPFMS validates bank accounts through a ₹1 test credit. The account name returned by the bank must exactly match the registered entity name in PFMS. TaxClue guides clients on ensuring the bank account name matches exactly — even "Pvt. Ltd." vs "Private Limited" differences cause penny-drop failure
- Digital Signature RequirementSome PFMS modules require the vendor's authorised signatory to have a Class 3 DSC (Digital Signature Certificate) for portal-based registration workflows. TaxClue confirms DSC requirements and assists with obtaining one if needed
- Multi-Agency PFMS RegistrationEach Central Government agency has its own PFMS administrator. If you supply to multiple ministries, each may require a separate PFMS vendor activation. TaxClue coordinates multi-agency registration sequentially or in parallel as required
- PFMS Vendor Update on ChangesWhen your bank account, address, or GSTIN changes, the PFMS record must be updated before the next invoice — a payment to a closed or changed account creates a failed credit that takes weeks to reverse and re-process. TaxClue manages PFMS updates proactively
PFMS Registration — Step by Step
Agency Identification
Identify the specific Central Government agency (Ministry/Department/Central PSU) to which the PO belongs. The PFMS administrator for that agency initiates vendor creation — self-registration is not possible.
First StepDocument Package Prepared
PAN card, GSTIN, bank passbook/cancelled cheque, Certificate of Incorporation, authority letter from the agency confirming vendor onboarding. All names must be consistent across documents.
Day 1–2PFMS Vendor Creation Request
TaxClue coordinates with the agency's PFMS administrator. Vendor creation form submitted with all documents. PAN verified against CBDT database in real time.
Day 2–4Bank Account Penny-Drop
₹1 test credit sent to the declared bank account. Name returned by bank verified against PFMS entity name — must match exactly. Mismatch = failed verification, account resubmission required.
Critical StepGSTIN Verification
GSTIN validated against GSTN database. GST registration status (Regular / Composition / Cancelled) verified. Active status required — cancelled GSTIN blocks payment.
Day 4–6Vendor ID Activated
PFMS vendor ID issued. Payments from the agency can now be processed directly to the verified bank account. ID shared with the agency's DDO and PAO for payment routing.
Registration CompleteRegister before the first invoice, not after: Suppliers who win a Central Government order and then discover they are not PFMS-registered face a delay of 2–4 weeks while registration is completed — and the payment SLA clock is often not paused during this period. PFMS registration takes 3–7 working days with TaxClue's coordination. Complete it the moment the PO is received.
Contract Agreement Documentation — Sign a Contract That Protects Your Payment, Not Just the Buyer's
Government and PSU contracts are drafted by the buyer's legal team — and they are drafted to protect the buyer. Standard government supply contracts include one-sided penalty clauses for late delivery, liquidated damages provisions that can wipe out profit margins on a delayed order, and payment terms that are vague enough to allow indefinite delay. A supplier who signs without reviewing and negotiating specific clauses accepts every risk and waives significant protections.
TaxClue's contract documentation service provides review, annotation, and — where negotiation is possible — recommended modifications to standard government and PSU supply contracts. For private sector or corporate buyer contracts, TaxClue drafts supplier-favourable contract terms from scratch. For all contract types, TaxClue prepares the supplier's counterpart obligations — performance security, insurance, indemnity — in the correct format the buyer requires.
- Payment Terms ReviewContract payment clauses are reviewed for: payment timeline (30 days, 45 days, or "within reasonable time" — the last being unenforceable), advance payment provisions, milestone payment structure, and retention money percentage and release conditions
- Penalty and Liquidated Damages (LD) Clause AnalysisLD provisions in government contracts — typically 0.5% per week of delay on undelivered value — must be reviewed for the cap on maximum LD, the circumstances that constitute force majeure (excluding LD), and the process for applying LD (notice required vs automatic deduction)
- Performance Security DocumentationGovernment contracts above a threshold require a Performance Bank Guarantee (PBG) — typically 5–10% of contract value. TaxClue prepares the PBG application with the correct bank guarantee format prescribed in the contract, verifies the validity period matches contract requirements, and tracks PBG renewal dates
- Dispute Resolution Mechanism ReviewGovernment contracts typically include arbitration clauses — important for payment disputes. The arbitration clause specifies who appoints the arbitrator (often the buyer, creating bias), the seat of arbitration, and the governing law. TaxClue flags provisions that disadvantage the supplier
- Contract Amendment DocumentationWhen contract terms change after signing — extended delivery timelines, additional quantities, modified specifications — formal contract amendments (amendment letters or supplementary agreements) must be signed. TaxClue drafts these amendments to ensure the original contract protections extend to the modified scope
- Completion Certificate & Contract ClosureAt contract completion, a formal completion certificate and release of retention money / PBG refund application must be filed. TaxClue prepares these documents in the format the buyer's contract requires, initiating the contract closure process that releases retained funds
Key Contract Clauses — What TaxClue Reviews & Flags
Payment Timeline
"Within reasonable time" is unenforceable. TaxClue flags clauses without a specific day count and recommends inserting the applicable SLA (30 days for Central Govt, 10 days on GeM)
Payment RiskLiquidated Damages Cap
LD without a maximum cap can exceed the contract value. Standard practice is 10% cap. TaxClue flags uncapped LD and recommends a specific maximum
High RiskForce Majeure
LD and penalty clauses must not apply during force majeure events. TaxClue verifies the FM clause covers the specific events relevant to the supplier's delivery chain
ProtectionAdvance Payment Provision
For large-value contracts, 10–30% advance against bank guarantee is standard but not always drafted in. TaxClue identifies whether to negotiate an advance provision
Cash FlowArbitration Appointment
A clause allowing only the buyer to appoint an arbitrator creates inherent bias. TaxClue flags this and recommends mutual appointment or institutional arbitration (ICA/ICADR)
Dispute RiskVariation & Change Orders
Contract should specify how scope changes are valued and paid — "at rates to be agreed" is insufficient. TaxClue recommends a specific rate schedule or formula for variations
Scope RiskRetention Money Release
Retention percentage and release conditions must be explicitly stated — "on satisfactory completion" without a time limit allows indefinite retention. TaxClue recommends specific release timelines
Cash ReleasePrice Variation Clause
For long-duration contracts, price variation linked to a published index (WPI/CPI/RBI rate) protects against input cost inflation. TaxClue flags fixed-price contracts above 12 months for PV clause insertion
Inflation Protection❓ Frequently Asked Questions
GeM's 10-day payment SLA is a contractual commitment between the government buyer and the seller — and there are escalation mechanisms. Here is the full escalation path. First: verify the payment status in your GeM seller dashboard under "Orders → Payment Status" — confirm whether the delay is at the buyer acceptance stage, DDO stage, or PAO stage, as each has a different resolution path. Second: if the buyer has accepted but PAO has not processed, raise a query through GeM's "Grievance" module — this creates a ticket that the buyer's organisation is required to respond to within 7 working days. Third: for persistent delays beyond 30 days post-acceptance, TaxClue prepares a formal letter to the buyer's Nodal Officer for GeM compliance (every government organisation has one) — this escalation typically resolves payment within 7–10 more days. Fourth: if the order was to a MSME-covered buyer under the MSME Development Act, TaxClue prepares an MSME Samadhaan application for compound interest on the delayed amount. Fifth: for very large delayed payments (above ₹50 lakh), TaxClue advises on approaching the Micro and Small Enterprise Facilitation Council (MSEFC) under the MSMED Act. Most delayed payments are resolved at step two or three. The key is moving through the escalation path systematically rather than waiting passively.
PFMS — Public Financial Management System — is the Government of India's integrated expenditure management and payment platform, maintained by the Controller General of Accounts (CGA) under the Ministry of Finance. All Central Government expenditure — payments from Central Ministries, Departments, Autonomous Bodies funded by Central Government, and Central PSUs for their government-funded projects — is processed through PFMS. State Government payments typically use their own Financial Management Information Systems (FMIS) — each state has its own (IFMS in many states, BEAMS in Kerala, IFMIS in others) — and these do not use PFMS. For suppliers primarily dealing with state government orders, PFMS registration may not be required. Payments from Central PSUs for their commercial operations (not government-funded projects) may go through the PSU's own ERP system (SAP, Oracle) without PFMS. TaxClue identifies whether PFMS registration is required for your specific buyer and order before initiating the registration process.
Whether LD is enforceable for a 3-day delay depends on several contract-specific factors. First: does the signed contract actually include an LD clause? Many smaller government orders — particularly GeM direct purchase orders — are placed on standard GeM terms which have a rating mechanism and cancellation right but not always a formal LD deduction mechanism. Second: if an LD clause exists, does it require prior written notice before deduction? Many government contracts require the buyer to issue a delay notice before deducting LD — a unilateral deduction without notice may be challengeable. Third: was the delay caused fully by the supplier, or were there contributing factors on the buyer's side — delayed site access, PO amendments, force majeure events? Contributing buyer factors are grounds for waiver of LD. Fourth: is there a minimum delay period before LD kicks in? Some contracts specify that LD applies only if delay exceeds a grace period (often 7–14 days). Fifth: does the LD clause have a maximum cap, and has the proposed deduction exceeded it? TaxClue reviews your specific contract and delivery timeline against these criteria and prepares a formal representation to the buyer's procurement officer if the LD deduction is challengeable — in many cases, LD waivers or reductions are granted when formally and correctly requested with appropriate documentation.
A rejected invoice correction requires specific GST procedural steps — you cannot simply issue a corrected invoice with the same invoice number. The correct procedure under GST rules is: (1) Issue a Credit Note against the original invoice — the credit note references the original invoice number and reverses the incorrect amount. The credit note should be issued within the financial year of the original invoice where possible (this matters for ITC reversal in the buyer's GSTR-2B). (2) Issue a fresh invoice with a new invoice number, correct GST rate, and the same order/PO reference. (3) Upload the fresh invoice to the GeM portal or physically resubmit to the buyer's accounts section — the original rejected invoice reference may need to be noted. (4) Inform the buyer's accounts officer of the credit note and fresh invoice — provide both documents together to avoid confusion. The payment timeline typically restarts from the fresh invoice acceptance date, though some buyers honour the original submission date for SLA purposes when the error was minor. TaxClue prepares the credit note, fresh invoice, and the covering communication to the buyer to minimise the payment delay from the correction process.
Performance Bank Guarantee (PBG) is mandatory for most government contracts above a threshold — typically ₹25 lakh for Central Government contracts, though individual organisations set their own thresholds. The PBG amount is usually 3–10% of the contract value, submitted within 15–30 days of contract award. For MSME-registered suppliers, some government buyers accept a Demand Draft or Fixed Deposit Receipt in lieu of a bank guarantee — MSME suppliers should specifically request this substitution as it avoids the bank guarantee processing fee and the need for a sufficient credit limit with the bank. If your bank is unwilling to issue a guarantee (due to insufficient collateral or credit limit), options include: (1) approaching a different bank — smaller cooperative banks sometimes issue guarantees against cash margin more readily; (2) requesting the buyer to allow a cash security deposit of equivalent amount; (3) for MSME suppliers, specifically invoking the MSME exemption provision if the buyer offers one; (4) approaching SIDBI or NSIC for guarantee coverage schemes for MSMEs. TaxClue advises on the most viable PBG route for your specific situation and prepares the bank guarantee application with the correct format and validity as specified in the contract.
⚠️ 7 Payment Errors That Delay Government Receipts
- Invoicing a Central Government buyer without PFMS registration — the payment is processed internally but fails to credit because there is no verified bank account entry in the PFMS system; tracing and correcting a failed PFMS credit takes 3–6 weeks
- Wrong buyer GSTIN on the invoice — government organisations have multiple GSTINs for different offices; an invoice with the head-office GSTIN submitted to a regional office is rejected by that office's accounts section and must be reissued with a credit note
- Bank account name in PFMS not exactly matching entity name — "ABC Pvt Ltd" vs "ABC Private Limited" fails the penny-drop verification; the PFMS administrator must delete the entry and recreate it with the exact matching name
- Not uploading delivery proof in the GeM portal before raising an invoice — the GeM system links payment to delivery confirmation; invoices raised before delivery confirmation is uploaded sit in a pending state and the 10-day SLA clock never starts
- Failing to track retention money release — security deposits of 5–10% are routinely retained beyond the contract warranty period simply because the supplier never formally applied for release; these amounts can sit unreleased for years without a formal closure application
- Signing a contract with a liquidated damages clause that has no maximum cap — a 0.5% per week LD with no maximum on a ₹1 crore contract can theoretically exceed the contract value for extended delays; TaxClue reviews LD caps before every contract signature
- Not claiming TDS credit in ITR — government buyers deduct TDS (typically 2% under Section 194C) from all payments; if the deductor fails to file the TDS return correctly, the credit doesn't appear in Form 26AS and the supplier effectively pays tax twice; TaxClue reconciles TDS credits and follows up with deductors who have not filed
Trusted by 10,000+ Clients Across India
4.9 / 5 average rating · Google Reviews · Verified procurement clients
"We fulfilled a ₹14 lakh Central Government order and the payment was stuck for 3 months. We didn't know it was because we weren't registered on PFMS — the PAO was trying to process the payment but had nowhere to send it. TaxClue registered us on PFMS in 5 days. The payment arrived the following week."
"TaxClue reviewed our ONGC supply contract before signing and flagged the LD clause — it had no maximum cap. A 3-week delivery delay would have cost us ₹1.8 lakh in LD deductions on a ₹12 lakh order. TaxClue negotiated an insertion of a 10% maximum cap and a 7-day grace period. We had a 4-day delay on the actual delivery — LD was waived entirely."
"My invoice had 12% GST instead of 18% on a product that changed rates. Accounts rejected it. I had no idea how to issue a credit note and re-invoice without making a mess of my GST returns. TaxClue did it correctly — credit note, fresh invoice, uploaded to GeM, communicated to the buyer. Payment cleared 12 days after resubmission."
"Three GeM payments were stuck — buyer had accepted but DDO hadn't approved for 6 weeks. TaxClue raised a grievance through GeM for all three simultaneously and followed up with the buyer's nodal officer. All three payments processed within 10 days of escalation. Total recovery: ₹6.2 lakh that had been sitting idle for nearly 2 months."
"I had ₹3.4 lakh in security deposits across 5 completed PSU contracts that I'd never formally applied to release. TaxClue prepared all 5 completion certificates and retention refund applications. Four of the five PSUs processed releases within 30 days. The fifth required a reminder. Total: ₹3.4 lakh returned that had been sitting in PSU accounts for 14 months."
"TaxClue caught a PFMS penny-drop failure caused by our bank account being registered as 'ABC Pvt. Ltd.' in PFMS while the bank records showed 'ABC Private Limited'. A single difference in 2 words was blocking every Central Government payment. Fixed in 2 days by correcting the PFMS entry. Such a small thing, such a big problem — and we'd never have found it on our own."
Complete Your Procurement & Payment Cycle
The Order Is Fulfilled. The Work Is Done. The Payment Should Arrive — and TaxClue Makes Sure It Does.
Every rupee you are owed from a completed government order has a path to your bank account. TaxClue removes every obstacle on that path — wrong invoices, unregistered PFMS accounts, stuck payment queues, and contracts that don't protect your interests.
🔒 Confidential · Invoice to cleared payment · 4.9★ · GeM · PFMS · PSU · Central Govt. · Contract Review · MSME Rights